CHARO DEL GENIO
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    • Graphical sequence generator
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    • Sampling graphs with given correlations
    • TomoDock
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Books and edited volumes

D. Foster, N. G Fytas, C. I. del Genio, R. Holtzman, A. Kumar, S. Horn, A. Potherat, M. Weigel and T. Yavors'kii
XXXII IUPAP Conference on Computational Physics
Journal of Physics: Conference Series 2207, 011001 (2022)
Link to the publisher

S. Boccaletti, A. Pisarchik, C. I. del Genio and A. Amann
Synchronization - From coupled systems to complex networks
Cambridge University Press, 2018
ISBN:9781107056268
Link to the publisher


Journal articles

  • S. Boccaletti, P. De Lellis, C. I. del Genio, K. Alfaro-Bittner, R. Criado, S. Jalan and M. Romance
    The structure and dynamics of networks with higher order interactions
    Physics Reports 1018, 1 (2023)

    Link to the journal
    Direct link to the preprint


  • E. Connelly, C. Lee,  J. Furner Pardoe, C. I. del Genio and F. Harrison
    A case study of the Ancientbiotics collaboration
    Patterns 3 (2022)

    Link to the journal
    Direct link to the article

  • L. Qi, M. Kwiatkowski, H. Chen, L. Hoermayer, S. Sinclair, M. Zou, C. I. del Genio, M. F. Kubeš, R. Napier, K. Jaworski and J. Friml
    Adenylate cyclase activity of TIR1/AFB auxin receptors in plants
    Nature 611, 133 (2022)

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    Direct link to the preprint

  • C. I. del Genio, S. Faci-Lázaro, J. Gómez-Gardeñes and S. Boccaletti
    Mean-field nature of synchronization stability in networks with multiple interaction layers
    Communications Physics 5, 121 (2022)

    Link to the journal
    Direct link to the preprint
    Link to the arXiv

  • A. York, A. J. Lloyd, C. I. del Genio, J. Shearer, K. J. Hinxman, K. Fritz, V. Fulop, C. G. Dowson, S. Khalid and D. I. Roper
    Structure-based modeling and dynamics of MurM, a Streptococcus pneumoniae penicillin resistance determinant present at the cytoplasmic membrane
    Structure 29, P731 (2021)

    Link to the journal
    Direct link to the preprint
    Link to the bioRxiv
    Link to the crystal structure on the Protein Data Bank (pdb)
    Direct link to the pdb file (6SNR)

  • Y.-S. Lee, R. Maple, J. Dürr, A. Dawson, S. Tamim, C. I. del Genio, R. Papareddy, A. Luo, J. C. Lamb, S. Amantia, A. W. Sylvester, J. A. Birchler, B. C. Meyers, M. D. Nodine, J. Rouster and J. Gutierrez-Marcos
    A transposon surveillance mechanism that safeguards plant male fertility during stress
    Nat. Plants 7, 34 (2021)

    Link to the journal
    Direct link to the preprint
    Link to the bioRxiv

  • E. Connelly, C. I. del Genio and F. Harrison
    Data mining a medieval medical text reveals patterns in ingredient choice that reflect biological activity against infectious agents
    mBio 11, e03136 (2020)

    Link to the journal
    Supplementary material

  • M. Quareshy, J. Prusinska, M. Kieffer, K. Fukui, A. J. Pardal, S. Lehmann, P. Schäfer, C. I. del Genio, S. Kepinski, K. Hayashi, A. Marsh and R. M. Napier
    The tetrazole analogue of the auxin indole-3-acetic acid binds preferentially to TIR1 and not AFB5
    ACS Chemical Biology 13, 2585 (2018)

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    Direct link to the preprint
    Link to the arXiv


  • K. Retzer, J. Lacek , R. Skokan, C. I. del Genio, S. Vosolsobě, M. Laňková, K. Malínská, N. Konstantinova, E. Zažímalová, R. M. Napier, J. Petrášek and C. Luschnig
    Evolutionary conserved cysteines function as cis-acting regulators of Arabidopsis PIN-FORMED 2 distribution
    International Journal of Molecular Science 18(11), 2274 (2017)

    Link to the journal
    PDB file of the PIN2 model


  • F. Botta and C. I. del Genio
    Analysis of the communities of an urban mobile phone network
    PLoS One 12 (3), e0174198 (2017)

    Link to the journal


  • F. Botta and C. I. del Genio
    Finding network communities using modularity density
    Journal of Statistical Mechanics, 123402 (2016)

    Link to the journal
    Direct link to the preprint
    Link to the arXiv
    Link to a code implementing the algorithm (on Federico Botta's web page)


  • C. I. del Genio, J. Gómez-Gardeñes, I. Bonamassa and S. Boccaletti
    Synchronization in networks with multiple interaction layers
    Science Advances 2, e1601679 (2016)

    Link to the journal
    Direct link to the preprint
    Direct link to the supplementary material
    Link to the arXiv


  • V. Uzunova, M. Quareshy, C. I. del Genio and Richard M. Napier
    Tomographic docking suggests the mechanism of auxin receptor TIR1 selectivity
    Open Biology 6, 160139 (2016)

    Link to the journal
    Direct link to the preprint
    Direct link to the supplementary material
    Link to the arXiv
    Link to the bioRxiv
    Link to the TomoDock code


  • C. I. del Genio, M. Romance, R. Criado and S. Boccaletti
    Synchronization in dynamical networks with unconstrained structure switching
    Phys. Rev. E 92, 062819 (2015)

    Link to the journal
    Direct link to the preprint
    Link to the arXiv


  • K. E. Bassler, C. I. del Genio, P. Erdős, I. Miklós and Z. Toroczkai
    Exact sampling of graphs with prescribed degree correlations
    New J. Phys. 17, 083052 (2015)

    Link to the journal
    Direct link to the preprint
    Link to the arXiv
    Link to a code implementing the algorithm


  • S. Treviño III, A. Nyberg, C. I. del Genio and K. E. Bassler
    Fast and accurate determination of modularity and its effect size
    J. Stat. Mech. - Theory E. (2015) P02003

    Link to the journal
    Direct link to the preprint
    Link to the arXiv
    Link to a code implementing the algorithm


  • S. Boccaletti, G. Bianconi, R. Criado, C. I. del Genio, J. Gómez-Gardeñes, M. Romance, I. Sendiña-Nadal, Z. Wang and M. Zanin
    The structure and dynamics of multilayer networks
    Phys. Rep. 544, 1 (2014)

    Link to the journal
    Direct link to the preprint (zipped)
    Link to the arXiv


  • O. Williams and C. I. del Genio
    Degree correlations in directed scale-free networks
    PLoS ONE 9 (10), e110121 (2014)

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    Direct link to the preprint
    Link to the arXiv


  • C. I. del Genio and T. House
    Endemic infections are always possible on regular networks
    Phys. Rev. E 88, 040801(R) (2013)

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    Direct link to the preprint
    Link to the arXiv


  • H. Kim, C. I. del Genio, K. E. Bassler and Z. Toroczkai
    Constructing and sampling directed graphs with given degree sequences
    New J. Phys. 14, 023012 (2012)

    Link to the journal
    Direct link to the preprint
    Link to the arXiv
    Link to a code implementing the algorithm


  • C. I. del Genio and T. Gross
    Emergent bipartiteness in a society of knights and knaves
    New J. Phys. 13, 103038 (2011)

    Link to the journal

    Direct link to the preprint
    Link to the arXiv


  • C. I. del Genio, T. Gross and K. E. Bassler
    All scale-free networks are sparse
    Phys. Rev. Lett. 107, 178701 (2011)

    Link to the journal

    Direct link to the preprint
    Link to the arXiv

    The accompanying Viewpoint in Physics can be found here.
    For a direct link to the article in pdf format, click here.


  • M. D. Reichl, C. I. del Genio and K. E. Bassler
    Phase diagram for a 2d two-temperature diffusive XY model
    Phys. Rev. E 82, 040102(R) (2010)

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    Link to the arXiv


  • C. I. del Genio and K. E. Bassler
    Anomalous ordering in inhomogeneously strained materials
    Phys. Rev. E 82, 031115 (2010)

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    Direct link to the preprint
    Link to the arXiv


  • C. I. del Genio, K. E. Bassler, A. L. Korzhenevskiĭ, R. I. Barabash, J. Trenkler, G. F. Reiter and S. C. Moss
    Depth-dependent ordering, two-length-scale phenomena, and crossover behavior in a crystal featuring a skin layer with defects
    Phys. Rev. B 81, 144111 (2010)

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    Direct link to the preprint
    Link to the arXiv


  • C. I. del Genio, H. Kim, Z. Toroczkai and K. E. Bassler
    Efficient and exact sampling of simple graphs with given arbitrary degree sequence
    PLoS ONE 5 (4), e10012 (2010)

    Link to the journal
    Direct link to the preprint
    Link to the arXiv

    Link to a code implementing the algorithm

  • C. I. del Genio, J. Trenkler, K. E. Bassler, P. Wochner, D. R. Häffner, G. F. Reiter, J. Bai and S. C. Moss
    Depth-dependent critical behavior in V2H
    Phys. Rev. B 79, 184113 (2009)

    Link to the journal
    Direct link to the preprint
    Link to the arXiv
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  • Home
  • Publications
  • Computer codes
    • Graphical sequence generator
    • Graph sampling
    • Directed graph sampling
    • Graphical directed sequence generator
    • Community detection
    • Sampling graphs with given correlations
    • TomoDock
  • Media coverage
  • Alumni
  • Contact