Publication list

Books and edited volumes

D. Foster, N. G Fytas, C. I. del Genio, R. Holtzman, A. Kumar, S. Horn, A. Potherat, M. Weigel and T. Yavors'kii
XXXII IUPAP Conference on Computational Physics
Journal of Physics: Conference Series 2207, 011001 (2022)
Link to the publisher

S. Boccaletti, A. Pisarchik, C. I. del Genio and A. Amann
Synchronization - From coupled systems to complex networks
Cambridge University Press, 2018
ISBN:9781107056268
Link to the publisher

Journal articles

S. Boccaletti, P. De Lellis, C. I. del Genio, K. Alfaro-Bittner, R. Criado, S. Jalan and M. Romance
The structure and dynamics of networks with higher order interactions
Physics Reports 1018, 1 (2023)

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E. Connelly, C. Lee, J. Furner Pardoe, C. I. del Genio and F. Harrison
A case study of the Ancientbiotics collaboration
Patterns 3 (2022)

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L. Qi, M. Kwiatkowski, H. Chen, L. Hoermayer, S. Sinclair, M. Zou, C. I. del Genio, M. F. Kubeš, R. Napier, K. Jaworski and J. Friml
Adenylate cyclase activity of TIR1/AFB auxin receptors in plants
Nature 611, 133 (2022)

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C. I. del Genio, S. Faci-Lázaro, J. Gómez-Gardeñes and S. Boccaletti
Mean-field nature of synchronization stability in networks with multiple interaction layers
Communications Physics 5, 121 (2022)

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A. York, A. J. Lloyd, C. I. del Genio, J. Shearer, K. J. Hinxman, K. Fritz, V. Fulop, C. G. Dowson, S. Khalid and D. I. Roper
Structure-based modeling and dynamics of MurM, a Streptococcus pneumoniae penicillin resistance determinant present at the cytoplasmic membrane
Structure 29, P731 (2021)

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Link to the bioRxiv
Link to the crystal structure on the Protein Data Bank (pdb)
Direct link to the pdb file (6SNR)
Y.-S. Lee, R. Maple, J. Dürr, A. Dawson, S. Tamim, C. I. del Genio, R. Papareddy, A. Luo, J. C. Lamb, S. Amantia, A. W. Sylvester, J. A. Birchler, B. C. Meyers, M. D. Nodine, J. Rouster and J. Gutierrez-Marcos
A transposon surveillance mechanism that safeguards plant male fertility during stress
Nat. Plants 7, 34 (2021)

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E. Connelly, C. I. del Genio and F. Harrison
Data mining a medieval medical text reveals patterns in ingredient choice that reflect biological activity against infectious agents
mBio 11, e03136 (2020)

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Supplementary material
M. Quareshy, J. Prusinska, M. Kieffer, K. Fukui, A. J. Pardal, S. Lehmann, P. Schäfer, C. I. del Genio, S. Kepinski, K. Hayashi, A. Marsh and R. M. Napier
The tetrazole analogue of the auxin indole-3-acetic acid binds preferentially to TIR1 and not AFB5
ACS Chemical Biology 13, 2585 (2018)

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K. Retzer, J. Lacek , R. Skokan, C. I. del Genio, S. Vosolsobě, M. Laňková, K. Malínská, N. Konstantinova, E. Zažímalová, R. M. Napier, J. Petrášek and C. Luschnig
Evolutionary conserved cysteines function as cis-acting regulators of Arabidopsis PIN-FORMED 2 distribution
International Journal of Molecular Science 18(11), 2274 (2017)

Link to the journal
PDB file of the PIN2 model
F. Botta and C. I. del Genio
Analysis of the communities of an urban mobile phone network
PLoS One 12 (3), e0174198 (2017)

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F. Botta and C. I. del Genio
Finding network communities using modularity density
Journal of Statistical Mechanics, 123402 (2016)

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Link to the arXiv
Link to a code implementing the algorithm (on Federico Botta's web page)
C. I. del Genio, J. Gómez-Gardeñes, I. Bonamassa and S. Boccaletti
Synchronization in networks with multiple interaction layers
Science Advances 2, e1601679 (2016)

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V. Uzunova, M. Quareshy, C. I. del Genio and Richard M. Napier
Tomographic docking suggests the mechanism of auxin receptor TIR1 selectivity
Open Biology 6, 160139 (2016)

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Link to the TomoDock code
C. I. del Genio, M. Romance, R. Criado and S. Boccaletti
Synchronization in dynamical networks with unconstrained structure switching
Phys. Rev. E 92, 062819 (2015)

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K. E. Bassler, C. I. del Genio, P. Erdős, I. Miklós and Z. Toroczkai
Exact sampling of graphs with prescribed degree correlations
New J. Phys. 17, 083052 (2015)

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Link to a code implementing the algorithm
S. Treviño III, A. Nyberg, C. I. del Genio and K. E. Bassler
Fast and accurate determination of modularity and its effect size
J. Stat. Mech. - Theory E. (2015) P02003

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S. Boccaletti, G. Bianconi, R. Criado, C. I. del Genio, J. Gómez-Gardeñes, M. Romance, I. Sendiña-Nadal, Z. Wang and M. Zanin
The structure and dynamics of multilayer networks
Phys. Rep. 544, 1 (2014)

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Direct link to the preprint (zipped)
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O. Williams and C. I. del Genio
Degree correlations in directed scale-free networks
PLoS ONE 9 (10), e110121 (2014)

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C. I. del Genio and T. House
Endemic infections are always possible on regular networks
Phys. Rev. E 88, 040801(R) (2013)

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H. Kim, C. I. del Genio, K. E. Bassler and Z. Toroczkai
Constructing and sampling directed graphs with given degree sequences
New J. Phys. 14, 023012 (2012)

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Link to a code implementing the algorithm
C. I. del Genio and T. Gross
Emergent bipartiteness in a society of knights and knaves
New J. Phys. 13, 103038 (2011)

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C. I. del Genio, T. Gross and K. E. Bassler
All scale-free networks are sparse
Phys. Rev. Lett. 107, 178701 (2011)

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The accompanying Viewpoint in Physics can be found here.
For a direct link to the article in pdf format, click here.
M. D. Reichl, C. I. del Genio and K. E. Bassler
Phase diagram for a 2d two-temperature diffusive XY model
Phys. Rev. E 82, 040102(R) (2010)

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C. I. del Genio and K. E. Bassler
Anomalous ordering in inhomogeneously strained materials
Phys. Rev. E 82, 031115 (2010)

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C. I. del Genio, K. E. Bassler, A. L. Korzhenevskiĭ, R. I. Barabash, J. Trenkler, G. F. Reiter and S. C. Moss
Depth-dependent ordering, two-length-scale phenomena, and crossover behavior in a crystal featuring a skin layer with defects
Phys. Rev. B 81, 144111 (2010)

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C. I. del Genio, H. Kim, Z. Toroczkai and K. E. Bassler
Efficient and exact sampling of simple graphs with given arbitrary degree sequence
PLoS ONE 5 (4), e10012 (2010)

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Link to a code implementing the algorithm
C. I. del Genio, J. Trenkler, K. E. Bassler, P. Wochner, D. R. Häffner, G. F. Reiter, J. Bai and S. C. Moss
Depth-dependent critical behavior in V2H
Phys. Rev. B 79, 184113 (2009)

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