Books and edited volumes

D. Foster, N. G Fytas, C. I. del Genio, R. Holtzman, A. Kumar, S. Horn, A. Potherat, M. Weigel and T. Yavors'kii
XXXII IUPAP Conference on Computational Physics
Journal of Physics: Conference Series 2207, 011001 (2022)
Link to the publisher

S. Boccaletti, A. Pisarchik, C. I. del Genio and A. Amann
Synchronization - From coupled systems to complex networks
Cambridge University Press, 2018
ISBN:9781107056268
Link to the publisher


Journal articles

• S. Ramans-­ Harborough, A. P. Kalverda, I. W. Manfield, G. S. Thompson, M. Kieffer, V. Uzunova, M. Quareshy, J. Prusinska,
  S. Roychoudhry, K.-­I. Hayashi, R. Napier, C. del Genio and S. Kepinski
  Intrinsic disorder and conformational coexistence in auxin coreceptors
  Proc. Natl. Acad. Sci. USA 120, e2221286120 (2023)
  
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  Direct link to the preprint
  
  
• I. El Houari, P. Klíma, A. Baekelandt, P. E. Staswick, V. Uzunova, C. I. del Genio, W. Steenackers, P. I. Dobrev, R. Filepová, O. Novák, R. Napier, J. Petrášek, D. Inzé, W. Boerjan and B. Vanholme
  Non-specific effects of the cinnamate-4-hydroxylase inhibitor piperonylic acid
  The Plant Journal 115, 470 (2023)
  
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  Direct link to the preprint
  Link to the supplementary material
  
  
• S. Boccaletti, P. De Lellis, C. I. del Genio, K. Alfaro-Bittner, R. Criado, S. Jalan and M. Romance
  The structure and dynamics of networks with higher order interactions
  Physics Reports 1018, 1 (2023)
  
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  Direct link to the preprint
  
  
• E. Connelly, C. Lee,  J. Furner Pardoe, C. I. del Genio and F. Harrison
  A case study of the Ancientbiotics collaboration
  Patterns 3 (2022)
  
  Link to the journal
  Direct link to the article
  
  
• L. Qi, M. Kwiatkowski, H. Chen, L. Hoermayer, S. Sinclair, M. Zou, C. I. del Genio, M. F. Kubeš, R. Napier, K. Jaworski and J. Friml
  Adenylate cyclase activity of TIR1/AFB auxin receptors in plants
  Nature 611, 133 (2022)
  
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  Direct link to the preprint
  
  
• C. I. del Genio, S. Faci-Lázaro, J. Gómez-Gardeñes and S. Boccaletti
  Mean-field nature of synchronization stability in networks with multiple interaction layers
  Communications Physics 5, 121 (2022)
  
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  Direct link to the preprint
  Link to the arXiv
  
  
• A. York, A. J. Lloyd, C. I. del Genio, J. Shearer, K. J. Hinxman, K. Fritz, V. Fulop, C. G. Dowson, S. Khalid and D. I. Roper
  Structure-based modeling and dynamics of MurM, a Streptococcus pneumoniae penicillin resistance determinant present at the cytoplasmic membrane
  Structure 29, P731 (2021)
  
  Link to the journal
  Direct link to the preprint
  Link to the bioRxiv
  Link to the crystal structure on the Protein Data Bank (pdb)
  Direct link to the pdb file (6SNR)
  
  
• Y.-S. Lee, R. Maple, J. Dürr, A. Dawson, S. Tamim, C. I. del Genio, R. Papareddy, A. Luo, J. C. Lamb, S. Amantia, A. W. Sylvester, J. A. Birchler, B. C. Meyers, M. D. Nodine, J. Rouster and J. Gutierrez-Marcos
  A transposon surveillance mechanism that safeguards plant male fertility during stress
  Nat. Plants 7, 34 (2021)
  
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  Direct link to the preprint
  Link to the bioRxiv
  
  
• E. Connelly, C. I. del Genio and F. Harrison
  Data mining a medieval medical text reveals patterns in ingredient choice that reflect biological activity against infectious agents
  mBio 11, e03136 (2020)
  
  Link to the journal
  Supplementary material
  
  
• M. Quareshy, J. Prusinska, M. Kieffer, K. Fukui, A. J. Pardal, S. Lehmann, P. Schäfer, C. I. del Genio, S. Kepinski, K. Hayashi, A. Marsh and R. M. Napier
  The tetrazole analogue of the auxin indole-3-acetic acid binds preferentially to TIR1 and not AFB5
  ACS Chemical Biology 13, 2585 (2018)
  
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  Direct link to the preprint
  Link to the arXiv
  
  
• K. Retzer, J. Lacek , R. Skokan, C. I. del Genio, S. Vosolsobě, M. Laňková, K. Malínská, N. Konstantinova, E. Zažímalová, R. M. Napier, J. Petrášek and C. Luschnig
  Evolutionary conserved cysteines function as cis-acting regulators of Arabidopsis PIN-FORMED 2 distribution
  International Journal of Molecular Science 18(11), 2274 (2017)
  
  Link to the journal
  PDB file of the PIN2 model
  
  
• F. Botta and C. I. del Genio
  Analysis of the communities of an urban mobile phone network
  PLoS One 12 (3), e0174198 (2017)
  
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• F. Botta and C. I. del Genio
  Finding network communities using modularity density
  Journal of Statistical Mechanics, 123402 (2016)
  
  Link to the journal
  Direct link to the preprint
  Link to the arXiv
  Link to a code implementing the algorithm (on Federico Botta's web page)
  
  
• C. I. del Genio, J. Gómez-Gardeñes, I. Bonamassa and S. Boccaletti
  Synchronization in networks with multiple interaction layers
  Science Advances 2, e1601679 (2016)
  
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  Direct link to the preprint
  Direct link to the supplementary material
  Link to the arXiv
  
  
• V. Uzunova, M. Quareshy, C. I. del Genio and Richard M. Napier
  Tomographic docking suggests the mechanism of auxin receptor TIR1 selectivity
  Open Biology 6, 160139 (2016)
  
  Link to the journal
  Direct link to the preprint
  Direct link to the supplementary material
  Link to the arXiv
  Link to the bioRxiv
  Link to the TomoDock code
  
  
• C. I. del Genio, M. Romance, R. Criado and S. Boccaletti
  Synchronization in dynamical networks with unconstrained structure switching
  Phys. Rev. E 92, 062819 (2015)
  
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  Direct link to the preprint
  Link to the arXiv
  
  
• K. E. Bassler, C. I. del Genio, P. Erdős, I. Miklós and Z. Toroczkai
  Exact sampling of graphs with prescribed degree correlations
  New J. Phys. 17, 083052 (2015)
  
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  Direct link to the preprint
  Link to the arXiv
  Link to a code implementing the algorithm
  
  
• S. Treviño III, A. Nyberg, C. I. del Genio and K. E. Bassler
  Fast and accurate determination of modularity and its effect size
  J. Stat. Mech. - Theory E. (2015) P02003
  
  Link to the journal
  Direct link to the preprint
  Link to the arXiv
  Link to a code implementing the algorithm
  
  
• S. Boccaletti, G. Bianconi, R. Criado, C. I. del Genio, J. Gómez-Gardeñes, M. Romance, I. Sendiña-Nadal, Z. Wang and M. Zanin
  The structure and dynamics of multilayer networks
  Phys. Rep. 544, 1 (2014)
  
  Link to the journal
  Direct link to the preprint (zipped)
  Link to the arXiv
  
  
• O. Williams and C. I. del Genio
  Degree correlations in directed scale-free networks
  PLoS ONE 9 (10), e110121 (2014)
  
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  Link to the arXiv
  
  
• C. I. del Genio and T. House
  Endemic infections are always possible on regular networks
  Phys. Rev. E 88, 040801(R) (2013)
  
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  Link to the arXiv
  
  
• H. Kim, C. I. del Genio, K. E. Bassler and Z. Toroczkai
  Constructing and sampling directed graphs with given degree sequences
  New J. Phys. 14, 023012 (2012)
  
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  Direct link to the preprint
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  Link to a code implementing the algorithm
  
  
• C. I. del Genio and T. Gross
  Emergent bipartiteness in a society of knights and knaves
  New J. Phys. 13, 103038 (2011)
  
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  Link to the arXiv
  
  
• C. I. del Genio, T. Gross and K. E. Bassler
  All scale-free networks are sparse
  Phys. Rev. Lett. 107, 178701 (2011)
  
  Link to the journal
  Direct link to the preprint
  Link to the arXiv
  The accompanying Viewpoint in Physics can be found here.
  For a direct link to the article in pdf format, click here.
  
  
• M. D. Reichl, C. I. del Genio and K. E. Bassler
  Phase diagram for a 2d two-temperature diffusive XY model
  Phys. Rev. E 82, 040102(R) (2010)
  
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• C. I. del Genio and K. E. Bassler
  Anomalous ordering in inhomogeneously strained materials
  Phys. Rev. E 82, 031115 (2010)
  
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• C. I. del Genio, K. E. Bassler, A. L. Korzhenevskiĭ, R. I. Barabash, J. Trenkler, G. F. Reiter and S. C. Moss
  Depth-dependent ordering, two-length-scale phenomena, and crossover behavior in a crystal featuring a skin layer with defects
  Phys. Rev. B 81, 144111 (2010)
  
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  Link to the arXiv
  
  
• C. I. del Genio, H. Kim, Z. Toroczkai and K. E. Bassler
  Efficient and exact sampling of simple graphs with given arbitrary degree sequence
  PLoS ONE 5 (4), e10012 (2010)
  
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  Direct link to the preprint
  Link to the arXiv
  Link to a code implementing the algorithm
  
  
• C. I. del Genio, J. Trenkler, K. E. Bassler, P. Wochner, D. R. Häffner, G. F. Reiter, J. Bai and S. C. Moss
  Depth-dependent critical behavior in V2H
  Phys. Rev. B 79, 184113 (2009)
  
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  Link to the arXiv